Thanks fo the quick response. As I see it, the problem with the negative isolation switch, is if the switches on the cct board are left closed, then 12v will be found on all the circuits in the boat including shower pump, bilge, pilot etc, where there is the potential to find a route to ground - in my case it seems to be the keel. As a bit of background, I have been putting on a large zinc anode on the keel for the past 10 years during the annual lift for antifouling, the following year it has disappeared and there are plenty of rust soars breaking thorugh the antifouling.
The alternator has a splitter between it and the 2 battery banks, so both can be charge simultaneously. As detailed before, the charger just charges the domestic batteries; no splitter, any idea why not?.
What I would like to do is completely isolate the batteries when in port but at the same time keep them charged. At the moment I dont seem to have a problem with the engine battery, it holds its charge well over the winter period - surprising considering the boat is not used between October and May. I still think it is a good idea to keep it charged, although the counter argument is that constant charge may 'cook' it.
The charger has a second port on it marked Bat II. Cant find any manual in my documentation for it. Also cant find anything on the internet. I dont know enough about chargers to understand how this interacts with the other port BattI. I will try and attach a photo of the charger. Doesn't help that all labelling is in german - for that matter so are the cct diagrams.
I will look up the equipment you have used. How is yours configured? Appreciate your help.