My boat has a factory-fit blower, mounted above the engine, with the intake at the top. The hot air goes through 100mm flexible ducting to one side of the transom. Another 100mm duct goes from the other side of the transom to underneath the engine, to bring ambient air in.
The blower is a standard Rule In-Line Blower. However, interestingly it's a 24v version, not a 12v version. This may be to minimise noise, as the blower runs all the time the engine is on.