I have a D2-75F Engine with an 115A Alternator and i have had 2x140Ah lead acid batteries in the same arrangement as you, with the similar problem (boring long time to charge the batteries with the engine). As you mentioned, these kind of batteries should only take 10% of their rated capacity to charge. So the problem is not the alternator, but the battery. If your battery-set isn't fresh anymore, the charging time until full is growing further more .
At first i would suggest to install a battery-monitor-system, which allows to see the state of charge of the battery and the in- or outgoing battery-current and the voltage as well.
With the experience, what's really happening, you are able to decide what to do.
As a long term cruiser i finally dropped the lead acid batteries and ended with 400Ah Lifepo4, but this is another (expensive) story, but i didn't touch the alternator or the charging regulator.