It might just be that they need to remove the panel at the foot of the companionway in order to move the engine slightly forwards. On my B36(2002) this panel is designed to be easily removed, being held in place by six or eight long screws. With that out of the way it allows a bit more space to manoeuvre the engine during this operation, as well as easier access to the mounting bolts. But as Yngmar has said, there shouldn’t be any need to interfere with other woodwork.
I’m guessing that you are changing the diaphragm on account of Volvo’s seven year recommendation, and while there’s no harm in doing that (other than to your pocket !), when mine was last changed over winter 2010/2011, it was by then coming up for nine years old and was in absolutely perfect condition. It would seem from discussions elsewhere within the forum that Volvo’s recommendation is very conservative. The present diaphragm is now eight years old, but on the basis of the condition of the original diaphragm, this one is going to remain in service for many more years.
They will need to disconnect the wiring from the alternator to allow the engine to be moved, so it’s worthwhile getting a photograph of those wires to ensure they get reconnected correctly. The yard workmen reconnected mine incorrectly, but I noticed although not before running the engine for a few minutes. Fortunately I don’t think it did any damage as everything related to it seems to have worked properly ever since then.