I think the best solution is a separate battery adjacent to the thruster. Charging via B2B-charger next to thruster battery, connected to house batteries. The cabling needs only small diameters, sufficient for the current of the B2B-charger.
I former had a solution with heavy cabling from house batteries, but for the long cabling distances (i have a B46) the cables with 50mm2 were not sufficient. Especially after long days without running engine the house batteries went weak and could´nt provide sufficient voltage for thruster. So we fitted another AGM-type battery next to the thruster, galvanic-coupled with the house batteries and simulteanously charged with house batteries. This caused the new thruster battery in 2 years to die, because it was not sufficiently charged due to voltage drop between house and thruster battery and different ages and types of house- and thruster batteries. We replaced died thruster battery with a standard starter battery (wet lead acid, 105Ah) and fitted B2B-charger (12V/12V/20A), since then (3 years ago) everthing is fine. I think, an AGM is wasted money, because discharge characteristic of a thruster seems to be similar to starting an engine (high current over short times). In our case dimensions of battery and thruster are fully sufficient.
Regards Robert