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Am I really on the wrong track when i suspect the cutoff valve? Can the valve really break when you turn it?
If yours is the same shut off valve as that supplied on many of the boats from the early 2000s, then it’s unlikely that it will actually shut off completely. Some of us have run our engines for hours and hours with the so called shut off valve in the shut position. As for breaking, I doubt that would happen. On my boat the only difference it made having the valve in the shut position was to restrict the engine rpm to something around 2000.
I too have an MD2020 engine, and like you I find the priming pump to be a bit hit and miss as to whether it works when I want it to. I gather it will work better when the engine crankshaft is in a certain position, but I can’t remember what that position should be. This is mainly because I do things perhaps a bit differently, and don’t use that hand pump at all.
Instead of fiddling around with the hand operated priming pump, I make a point of changing only one filter at a time, and when the first one is done I don’t bother with that tiresome hand pump, instead I go up and start the engine in the normal way and run it at slow speed. Usually enough fuel remains within the injector system for the engine to start and run, and at which point the capacity of the fuel pump far exceeds the amount of fuel the engine needs to run at slow speed. This sucks the fuel in from the tank and fills up the bowl around the filter I’ve just changed. Apart from a minor reduction in rpm as it gets past the last bit of air in the system before the speed comes back up, I’ve not needed to use the hand pump at all since the very first filter change I did. Once the first filter has been done and the engine run, then do the second filter in the same way. It has worked for me every time for the last eight years with one change of each of the filters every year.